Research map: Long-read low-pass sequencing enhances variant detection in a peanut MAGIC population

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  1. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff · Pablo Cingolani · 2012 · 13015 citations · Cited by this paper
  2. Multi-locus models of deleterious epimutation-selection balance and the evolution of recombination modifiers · 2026 · Related
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  7. Opportunities and challenges in long-read sequencing data analysis · Shanika L. Amarasinghe · 2020 · 2697 citations · Cited by this paper
  8. The curious case of sporadic nematode susceptibility in “Tifguard” peanut ( Arachis hypogaea ): seed mixture or genetic instability? · 2026 · Related
  9. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome · Aaron M. Wenger · 2019 · 2056 citations · Cited by this paper
  10. No evidence of sex-ratio meiotic drive associated with the X -linked In(1)Be inversion in Drosophila melanogaster · 2026 · Related
  11. A draft human pangenome reference · Wen‐Wei Liao · 2023 · 1236 citations · Cited by this paper
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  14. Annotated genome assemblies of two temperate North American dung beetles, Canthon chalcites and Phanaeus vindex · 2026 · Related
  15. Molecular Markers and Selection for Complex Traits in Plants: Learning from the Last 20 Years · Rex Bernardo · 2008 · 962 citations · Cited by this paper
  16. The complete sequence of the silkworm W chromosome uncovers its rapid evolution by large-scale duplications/deletions and translocation of W-linked genes · 2026 · Related
  17. Variation graph toolkit improves read mapping by representing genetic variation in the reference · Erik P. Garrison · 2018 · 934 citations · Cited by this paper
  18. A pseudo-phased genome assembly for Hemileia vastatrix reveals an isolate-specific chromosomal haploid trisomy · 2026 · Related
  19. Structural variant calling: the long and the short of it · Medhat Mahmoud · 2019 · 855 citations · Cited by this paper
  20. The genome sequence of segmental allotetraploid peanut Arachis hypogaea · David J. Bertioli · 2019 · 853 citations · Cited by this paper
  21. Peanuts as functional food: a review · Shalini Subhash Arya · 2015 · 653 citations · Cited by this paper
  22. A beginner's guide to low‐coverage whole genome sequencing for population genomics · Runyang Nicolas Lou · 2021 · 365 citations · Cited by this paper
  23. Pangenome graph construction from genome alignments with Minigraph-Cactus · Glenn Hickey · 2023 · 344 citations · Cited by this paper
  24. HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly · Sheina B. Sim · 2022 · 308 citations · Cited by this paper
  25. Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes · Jana Ebler · 2022 · 306 citations · Cited by this paper
  26. Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus · Bhavna Hurgobin · 2017 · 303 citations · Cited by this paper
  27. Long-read genome sequencing identifies causal structural variation in a Mendelian disease · Jason D. Merker · 2017 · 285 citations · Cited by this paper
  28. An integrated peach genome structural variation map uncovers genes associated with fruit traits · Jian Guo · 2020 · 160 citations · Cited by this paper
  29. Low-pass sequencing increases the power of GWAS and decreases measurement error of polygenic risk scores compared to genotyping arrays · Jeremiah H. Li · 2021 · 151 citations · Cited by this paper
  30. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies · Xuefang Zhao · 2021 · 144 citations · Cited by this paper
  31. Tools and Strategies for Long-Read Sequencing and De Novo Assembly of Plant Genomes · Hyungtaek Jung · 2019 · 131 citations · Cited by this paper
  32. Need for speed: manipulating plant growth to accelerate breeding cycles · Madhav Bhatta · 2021 · 119 citations · Cited by this paper
  33. Unveiling microbial diversity: harnessing long-read sequencing technology · Daniel Paiva Agustinho · 2024 · 117 citations · Cited by this paper
  34. Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing · Edwin A Solares · 2018 · 112 citations · Cited by this paper
  35. The role of genomic structural variation in the genetic improvement of polyploid crops · Sarah Schießl · 2018 · 108 citations · Cited by this paper
  36. Mapping of homoeologous chromosome exchanges influencing quantitative trait variation in Brassica napus · Anna H. Stein · 2017 · 106 citations · Cited by this paper
  37. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer · Akihiro Fujimoto · 2021 · 100 citations · Cited by this paper
  38. Genome-wide association study for grain yield and related traits in elite wheat varieties and advanced lines using SNP markers · Shengxing Wang · 2017 · 91 citations · Cited by this paper
  39. Insights Into the Genetic Basis of Blueberry Fruit-Related Traits Using Diploid and Polyploid Models in a GWAS Context · Luís Felipe V. Ferrão · 2018 · 91 citations · Cited by this paper

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