Research map: Environmental DNA and next-generation sequencing for post-elimination surveillance of neglected tropical diseases in the Philippines and the Western Pacific Region

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  1. Microbiome Datasets Are Compositional: And This Is Not Optional · Gregory Brian Gloor · 2017 · 3299 citations · Cited by this paper
  2. Investigation of an onchocerciasis educational intervention for improving knowledge, attitude, and prevention practices among endemic communities in Ghana · 2025 · Related
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  10. Experiences of piloting integrated bite case management in Zaria Metropolis, Nigeria · 2026 · Related
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  13. Environmental DNA shedding and decay rates from diverse animal forms and thermal regimes · Elizabeth Andruszkiewicz Allan · 2020 · 289 citations · Cited by this paper
  14. Neglected tropical disease (NTD) diagnostics: current development and operations to advance control · 2023 · Related
  15. Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds · Lynsey R. Harper · 2018 · 277 citations · Cited by this paper
  16. Nanopore long-read metabarcoding for comprehensive characterisation of parasitic nematodes in humans and animals: a development and diagnostic validation study · 2026 · Related
  17. Evaluation of Sampling, Analysis, and Normalization Methods for SARS-CoV-2 Concentrations in Wastewater to Assess COVID-19 Burdens in Wisconsin Communities · Shuchen Feng · 2021 · 270 citations · Cited by this paper
  18. Advancing schistosomiasis monitoring through optimised environmental DNA detection · 2025 · Related
  19. Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt ( Triturus cristatus ) · Lynsey R. Harper · 2018 · 264 citations · Cited by this paper
  20. Prevalence and molecular identification of fish-borne trematodes in endemic communities in Caraga region, Mindanao, Philippines · 2025 · Related
  21. Understanding and managing uncertainty and variability for wastewater monitoring beyond the pandemic: Lessons learned from the United Kingdom national COVID-19 surveillance programmes · Matthew J. Wade · 2021 · 249 citations · Cited by this paper
  22. Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool · Thomas Hoenen · 2015 · 241 citations · Cited by this paper
  23. The Multiple States of Environmental DNA and What Is Known about Their Persistence in Aquatic Environments · Quentin Mauvisseau · 2022 · 240 citations · Cited by this paper
  24. Release and degradation of environmental DNA and RNA in a marine system · Susanna A. Wood · 2019 · 226 citations · Cited by this paper
  25. Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities · Guang Zhang · 2018 · 192 citations · Cited by this paper
  26. Environmental DNA for improved detection and environmental surveillance of schistosomiasis · Mita Eva Sengupta · 2019 · 150 citations · Cited by this paper
  27. Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay · Joshua Batson · 2021 · 150 citations · Cited by this paper
  28. Detection and quantification of soil-transmitted helminths in environmental samples: A review of current state-of-the-art and future perspectives · Isaac Dennis Amoah · 2017 · 141 citations · Cited by this paper
  29. Characterization of Metagenomes in Urban Aquatic Compartments Reveals High Prevalence of Clinically Relevant Antibiotic Resistance Genes in Wastewaters · Charmaine Ng · 2017 · 132 citations · Cited by this paper
  30. Enhancing lower respiratory tract infection diagnosis: implementation and clinical assessment of multiplex PCR-based and hybrid capture-based targeted next-generation sequencing · Yuyao Yin · 2024 · 132 citations · Cited by this paper
  31. Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities · Paul Carini · 2020 · 128 citations · Cited by this paper
  32. Environmental DNA/RNA for pathogen and parasite detection, surveillance, and ecology · David A. Bass · 2023 · 123 citations · Cited by this paper
  33. Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors · Charmaine Ng · 2019 · 103 citations · Cited by this paper
  34. Cryptosporidium Propidium Monoazide-PCR, a Molecular Biology-Based Technique for Genotyping of Viable Cryptosporidium Oocysts · Cristin C. Brescia · 2009 · 100 citations · Cited by this paper
  35. Extracellular DNA in Environmental Samples: Occurrence, Extraction, Quantification, and Impact on Microbial Biodiversity Assessment · Sakcham Bairoliya · 2021 · 95 citations · Cited by this paper
  36. SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses · Mukhlid Yousif · 2023 · 93 citations · Cited by this paper
  37. Assessment of Helminth Biodiversity in Wild Rats Using 18S rDNA Based Metagenomics · Ryusei Tanaka · 2014 · 92 citations · Cited by this paper
  38. Adaptive geostatistical sampling enables efficient identification of malaria hotspots in repeated cross-sectional surveys in rural Malawi · Alinune Nathanael Kabaghe · 2017 · 89 citations · Cited by this paper
  39. Current status and topical issues on the use of eDNA-based targeted detection of rare animal species · Sofia Duarte · 2023 · 87 citations · Cited by this paper

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