Research map: Assessing the proinflammatory potential of sterile fecal microbiome filtrate from ulcerative colitis patients using an intestine-on-chip platform and automated image analysis

Back to the article

Papers in this map

  1. Fiji: an open-source platform for biological-image analysis · Johannes Schindelin · 2012 · 73297 citations · Cited by this paper
  2. Engineering oral biomaterials for overcoming gastrointestinal barriers · Yi Chen · 2026 · Cites this paper
  3. Early antibiotic exposure and vaccine immune responses in preterm infants: potential sex-specific differences · 2026 · Related
  4. Culture of Human Endothelial Cells Derived from Umbilical Veins. IDENTIFICATION BY MORPHOLOGIC AND IMMUNOLOGIC CRITERIA · ERIC A. JAFFE · 1973 · 6920 citations · Cited by this paper
  5. Early-life microbiota in the LIMIT cohort: unveiling meconium microbiota types beyond maternal lifestyle · 2026 · Related
  6. Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation · Nicholas Arpaia · 2013 · 4915 citations · Cited by this paper
  7. The gut microbiome and mitochondrial function in metabolism, immunity, and disease · 2026 · Related
  8. Cellpose: a generalist algorithm for cellular segmentation · Carsen Stringer · 2020 · 4690 citations · Cited by this paper
  9. Effect of pasteurized Akkermansia muciniphila MucT on insulin sensitivity, body composition, and GLP-1 production in subjects with metabolic syndrome: impact of low baseline gut Akkermansia levels · 2026 · Related
  10. Short Chain Fatty Acids (SCFAs)-Mediated Gut Epithelial and Immune Regulation and Its Relevance for Inflammatory Bowel Diseases · Daniela Parada Venegas · 2019 · 3868 citations · Cited by this paper
  11. Gut microbiome drives glycodeoxycholic acid-mediated attenuation of hypertension · 2026 · Related
  12. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment · Xochitl C. Morgan · 2012 · 2827 citations · Cited by this paper
  13. Salmonella exploits a quorum-sensing family signal of the gut commensal Stenotrophomonas maltophilia to facilitate its colonization · 2026 · Related
  14. Genetics and pathogenesis of inflammatory bowel disease · Bernard Khor · 2011 · 2653 citations · Cited by this paper
  15. Enteric-colonized Cronobacter spp. can disrupt the central nervous system without translocation across the host barriers · 2026 · Related
  16. Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification · Ignacio Arganda‐Carreras · 2017 · 2564 citations · Cited by this paper
  17. Towards standardized gut microbiota diagnostics: normobiosis beyond geographical borders · 2026 · Related
  18. Transcriptional Profiling of the Human Monocyte-to-Macrophage Differentiation and Polarization: New Molecules and Patterns of Gene Expression · Fernando O. Martínez · 2006 · 2385 citations · Cited by this paper
  19. Vitamin B6 produced by gut microbiome regulates host behavioral phenotypes through dopaminergic metabolism · 2026 · Related
  20. Gut microbiota-derived metabolites as key actors in inflammatory bowel disease · Aonghus Lavelle · 2020 · 2067 citations · Cited by this paper
  21. Lactiplantibacillus plantarum WJL ameliorates chronic kidney disease by inhibiting fibroblast growth factor 21 adaptive stress response via low protein diet · 2026 · Related
  22. A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis · Kathleen Machiels · 2013 · 1968 citations · Cited by this paper
  23. DAMP-sensing receptors in sterile inflammation and inflammatory diseases · Tao Gong · 2019 · 1686 citations · Cited by this paper
  24. Modulation of macrophage phenotype by cell shape · Frances Y. McWhorter · 2013 · 1520 citations · Cited by this paper
  25. MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ · David Legland · 2016 · 1519 citations · Cited by this paper
  26. Short-chain fatty acids: linking diet, the microbiome and immunity · Elizabeth R. Mann · 2024 · 1496 citations · Cited by this paper
  27. How informative is the mouse for human gut microbiota research? · Thi Loan Anh Nguyen · 2015 · 1368 citations · Cited by this paper
  28. Mucosal flora in inflammatory bowel disease · Alexander V. Swidsinski · 2002 · 1355 citations · Cited by this paper
  29. IL-12 and IL-23 cytokines: from discovery to targeted therapies for immune-mediated inflammatory diseases · Michele W.L. Teng · 2015 · 884 citations · Cited by this paper
  30. Effect of Fecal Microbiota Transplantation on 8-Week Remission in Patients With Ulcerative Colitis · Samuel Paul Costello · 2019 · 859 citations · Cited by this paper
  31. Regulation of Intestinal Barrier Function by Microbial Metabolites · Sweta Ghosh · 2021 · 843 citations · Cited by this paper
  32. Small airway-on-a-chip enables analysis of human lung inflammation and drug responses in vitro · Kambez Hajipouran Benam · 2015 · 833 citations · Cited by this paper
  33. Cells of the human intestinal tract mapped across space and time · Rasa Elmentaite · 2021 · 754 citations · Cited by this paper
  34. Efficacy of Sterile Fecal Filtrate Transfer for Treating Patients With Clostridium difficile Infection · Stephan Johannes Ott · 2016 · 735 citations · Cited by this paper
  35. Inflammatory Bowel Diseases (IBD) and the Microbiome—Searching the Crime Scene for Clues · Mirae Lee · 2020 · 683 citations · Cited by this paper
  36. IL-1β Causes an Increase in Intestinal Epithelial Tight Junction Permeability · Rana Al–Sadi · 2007 · 598 citations · Cited by this paper
  37. Microfluidic Organ-on-a-Chip Models of Human Intestine · Amir Bein · 2018 · 595 citations · Cited by this paper
  38. Impact of Bacterial Metabolites on Gut Barrier Function and Host Immunity: A Focus on Bacterial Metabolism and Its Relevance for Intestinal Inflammation · Naschla Gasaly · 2021 · 589 citations · Cited by this paper
  39. Human macrophage polarization in vitro: Maturation and activation methods compared · Daphne Y.S. Vogel · 2014 · 478 citations · Cited by this paper

Source: OpenAlex (CC0)