Research map: The metabolic trap: Candida parapsilosis inhibits Staphylococcus aureus biofilm maturation by disrupting pH homeostasis and inducing premature exodus

Papers in this map

1. edgeR : a Bioconductor package for differential expression analysis of digital gene expression data · Mark D. Robinson · 2009 · 45514 citations · Cited by this paper
2. A comparison of routine blood culture methods and multiplex quantitative PCR for detecting pathogens in simulated polymicrobial blood cultures · 2026 · Related
3. HTSeq—a Python framework to work with high-throughput sequencing data · Simon Anders · 2014 · 23287 citations · Cited by this paper
4. Candida glabrata and the host: a neglected affair · 2026 · Related
5. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype · Daehwan Kim · 2019 · 16606 citations · Cited by this paper
6. Waddlia chondrophila: from a bovine abortigenic agent to a potential cause of human adverse pregnancy outcomes · 2026 · Related
7. Biofilms: Survival Mechanisms of Clinically Relevant Microorganisms · Rodney M. Donlan · 2002 · 6672 citations · Cited by this paper
8. Anatomopathological uterine findings of Candida albicans infection in a vulvovaginal model · 2026 · Related
9. Epidemiology of Invasive Candidiasis: a Persistent Public Health Problem · Michael A. Pfaller · 2007 · 4224 citations · Cited by this paper
10. Cryptococcus neoformans responds to presence of Mycobacterium by diversifying its morphologies and remodelling its capsular material · 2026 · Related
11. Understanding biofilm resistance to antibacterial agents · David G. Davies · 2003 · 2808 citations · Cited by this paper
12. Temporal genetic changes in human bocavirus 1 in Fukushima, Japan, from 2018 to 2024 · 2026 · Related
13. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update · Enis Afgan · 2016 · 2375 citations · Cited by this paper
14. Investigation of the efficacy of high-dose flucloxacillin therapy for borderline oxacillin-resistant (BORSA) Staphylococcus aureus infections of Galleria mellonella larvae · 2026 · Related
15. Microtiter Dish Biofilm Formation Assay · George A. O’Toole · 2011 · 2241 citations · Cited by this paper
16. Evaluation of machine learning pipeline for blood culture outcome prediction on prospectively collected emergency department data · 2026 · Related
17. Surviving the Acid Test: Responses of Gram-Positive Bacteria to Low pH · Paul D. Cotter · 2003 · 1387 citations · Cited by this paper
18. Respiratory syncytial virus – from discovery to vaccines · 2026 · Related
19. Staphylococcus aureus biofilms · Nathan K. Archer · 2011 · 1031 citations · Cited by this paper
20. Face mask sampling for the detection of microbes in expelled aerosols and the impact of airway clearance on microbial yield in children with cystic fibrosis: a feasibility trial · 2026 · Related
21. Candida glabrata, Candida parapsilosis and Candida tropicalis : biology, epidemiology, pathogenicity and antifungal resistance · Sónia Marina Silva · 2011 · 951 citations · Cited by this paper
22. Candida parapsilosis , an Emerging Fungal Pathogen · David P. Trofa · 2008 · 872 citations · Cited by this paper
23. From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline · Yunshun Chen · 2016 · 839 citations · Cited by this paper
24. Candida orthopsilosis and Candida metapsilosis spp. nov. To Replace Candida parapsilosis Groups II and III · Arianna Tavanti · 2005 · 608 citations · Cited by this paper
25. Global Gene Expression in Staphylococcus aureus Biofilms · Karen E. Beenken · 2004 · 586 citations · Cited by this paper
26. Modulation of eDNA Release and Degradation Affects Staphylococcus aureus Biofilm Maturation · Ethan E. Mann · 2009 · 513 citations · Cited by this paper
27. A NovelStaphylococcus aureusBiofilm Phenotype Mediated by the Fibronectin-Binding Proteins, FnBPA and FnBPB · Eoghan O’Neill · 2008 · 501 citations · Cited by this paper
28. Differential Gene Expression Profiling of Staphylococcus aureus Cultivated under Biofilm and Planktonic Conditions · Alexandra Resch · 2005 · 497 citations · Cited by this paper
29. Methicillin resistance and the biofilm phenotype in Staphylococcus aureus · Hannah McCarthy · 2015 · 435 citations · Cited by this paper
30. Biofilms of non-Candida albicans Candidaspecies: quantification, structure and matrix composition · Sónia Marina Silva · 2009 · 397 citations · Cited by this paper
31. Association between Methicillin Susceptibility and Biofilm Regulation in Staphylococcus aureus Isolates from Device-Related Infections · Eoghan O’Neill · 2007 · 349 citations · Cited by this paper
32. Fungal diseases as neglected pathogens: A wake-up call to public health officials · Márcio Lourenço Rodrigues · 2020 · 341 citations · Cited by this paper
33. Biofilms: Formation, drug resistance and alternatives to conventional approaches · Ruba Mirghani · 2022 · 338 citations · Cited by this paper
34. Methicillin Resistance Alters the Biofilm Phenotype and Attenuates Virulence in Staphylococcus aureus Device-Associated Infections · Clarissa Pozzi · 2012 · 299 citations · Cited by this paper
35. Commensal Protection of Staphylococcus aureus against Antimicrobials by Candida albicans Biofilm Matrix · Eric F. Kong · 2016 · 298 citations · Cited by this paper
36. Polymicrobial bloodstream infections involving Candida species: analysis of patients and review of the literature · Stephen A. Klotz · 2007 · 258 citations · Cited by this paper
37. Staphylococcus aureus adherence to Candida albicans hyphae is mediated by the hyphal adhesin Als3p · Brian M. Peters · 2012 · 254 citations · Cited by this paper
38. The impacts of antimicrobial and antifungal activity of cell‐free supernatants from lactic acid bacteria in vitro and foods · Emma Mani‐López · 2021 · 230 citations · Cited by this paper
39. Candida albicans and Staphylococcus Species: A Threatening Twosome · Hans Carolus · 2019 · 211 citations · Cited by this paper

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