Research map: Deciphering viral action on host genome structure: a computational physics perspective
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Papers in this map
Interferon-Stimulated Genes: A Complex Web of Host Defenses
· William M. Schneider · 2014 · 3213 citations · Cited by this paper
Small-molecule LIFR inhibitors attenuate renal tubulointerstitial fibrosis
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· Geoffrey Fudenberg · 2016 · 2259 citations · Cited by this paper
Cohesin-mediated chromatin organization controls the differentiation and function of dendritic cells
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Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
· Adrian L. Sanborn · 2015 · 1981 citations · Cited by this paper
Indole-3-carbaldehyde mitigates fibrosis progression in MASH with T2DM via the SIRT1/TGF-β/SMAD signaling pathway
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· Simon A. Jones · 2018 · 1133 citations · Cited by this paper
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· Johan Harmen Gibcus · 2018 · 856 citations · Cited by this paper
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Heterochromatin drives compartmentalization of inverted and conventional nuclei
· Martin H. Falk · 2019 · 747 citations · Cited by this paper
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Chromatin organization by an interplay of loop extrusion and compartmental segregation
· Johannes Nuebler · 2018 · 741 citations · Cited by this paper
EGR2 promotes vascular smooth muscle cell differentiation and proliferation in outward remodeling during arteriovenous fistula maturation
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Complexity of chromatin folding is captured by the strings and binders switch model
· Mariano Barbieri · 2012 · 643 citations · Cited by this paper
Targeting 15-PGDH/15-oxoETE to mitigate inflammation and senescence in asthma
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Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism
· Zheng Hu · 2015 · 636 citations · Cited by this paper
The irisin-PINK1/Parkin axis plays an essential role in mediating microglial mitophagy: A crucial mechanism for exercise-induced neuroprotection against Parkinson's disease
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Transcription Elongation Can Affect Genome 3D Structure
· Sven Heinz · 2018 · 540 citations · Cited by this paper
tRNA-derived fragment tRF-17-8SPOL52 induces resistance to bortezomib in multiple myeloma via autophagy activation
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Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains
· Daniel Jost · 2014 · 516 citations · Cited by this paper
The first 12 months of COVID-19: a timeline of immunological insights
· Thiago de Amorim Carvalho · 2021 · 469 citations · Cited by this paper
Formation of Chromatin Subcompartments by Phase Separation
· Fabian Erdel · 2018 · 429 citations · Cited by this paper
Transferable model for chromosome architecture
· Michele Di Pierro · 2016 · 415 citations · Cited by this paper
Chromosome Compaction by Active Loop Extrusion
· Anton A. Goloborodko · 2016 · 357 citations · Cited by this paper
Nuclear architecture dictates HIV-1 integration site selection
· Bruna Marini · 2015 · 353 citations · Cited by this paper
Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization
· Chris A. Brackley · 2013 · 322 citations · Cited by this paper
Parallel analysis of transcription, integration, and sequence of single HIV-1 proviruses
· Kevin B. Einkauf · 2022 · 279 citations · Cited by this paper
Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia
· Marianna Zazhytska · 2022 · 273 citations · Cited by this paper
Polymer physics predicts the effects of structural variants on chromatin architecture
· Simona Bianco · 2018 · 265 citations · Cited by this paper
Polymer physics of chromosome large-scale 3D organisation
· Andrea M. Chiariello · 2016 · 233 citations · Cited by this paper
Epstein-Barr-Virus-Induced One-Carbon Metabolism Drives B Cell Transformation
· Liang Wei Wang · 2019 · 207 citations · Cited by this paper
Interphase human chromosome exhibits out of equilibrium glassy dynamics
· Guang Shi · 2018 · 190 citations · Cited by this paper
The fundamental role of chromatin loop extrusion in physiological V(D)J recombination
· Yu Zhang · 2019 · 189 citations · Cited by this paper
Enhancer–promoter contact formation requires RNAPII and antagonizes loop extrusion
· Shu Xin Zhang · 2023 · 176 citations · Cited by this paper
Nuclear landscape of HIV-1 infection and integration
· Marina Lušić · 2016 · 158 citations · Cited by this paper
SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry
· John Kee · 2022 · 157 citations · Cited by this paper
Wapl repression by Pax5 promotes V gene recombination by Igh loop extrusion
· Louisa Hill · 2020 · 155 citations · Cited by this paper
Principles of meiotic chromosome assembly revealed in S. cerevisiae
· Stephanie A. Schalbetter · 2019 · 150 citations · Cited by this paper
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