Research map: Clostridioides difficile in the oral microbiome: an in silico analysis

Back to the article

Papers in this map

  1. Basic local alignment search tool · Stephen F. Altschul · 1990 · 95819 citations · Cited by this paper
  2. A comparison of routine blood culture methods and multiplex quantitative PCR for detecting pathogens in simulated polymicrobial blood cultures · 2026 · Related
  3. Cutadapt removes adapter sequences from high-throughput sequencing reads · Marcel Martin · 2011 · 37152 citations · Cited by this paper
  4. Candida glabrata and the host: a neglected affair · 2026 · Related
  5. MultiQC: summarize analysis results for multiple tools and samples in a single report · Philip Ewels · 2016 · 11140 citations · Cited by this paper
  6. Waddlia chondrophila: from a bovine abortigenic agent to a potential cause of human adverse pregnancy outcomes · 2026 · Related
  7. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph · Dinghua Li · 2015 · 10555 citations · Cited by this paper
  8. Anatomopathological uterine findings of Candida albicans infection in a vulvovaginal model · 2026 · Related
  9. Sensitive protein alignments at tree-of-life scale using DIAMOND · Benjamin Buchfink · 2021 · 5461 citations · Cited by this paper
  10. Cryptococcus neoformans responds to presence of Mycobacterium by diversifying its morphologies and remodelling its capsular material · 2026 · Related
  11. Periodontal diseases · Denis F. Kinane · 2017 · 2642 citations · Cited by this paper
  12. Temporal genetic changes in human bocavirus 1 in Fukushima, Japan, from 2018 to 2024 · 2026 · Related
  13. The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation · Loreto Abusleme · 2013 · 1128 citations · Cited by this paper
  14. Investigation of the efficacy of high-dose flucloxacillin therapy for borderline oxacillin-resistant (BORSA) Staphylococcus aureus infections of Galleria mellonella larvae · 2026 · Related
  15. Clostridium difficile infection: review · Jacek Czepiel · 2019 · 716 citations · Cited by this paper
  16. Evaluation of machine learning pipeline for blood culture outcome prediction on prospectively collected emergency department data · 2026 · Related
  17. Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease · Bo Liu · 2012 · 420 citations · Cited by this paper
  18. Respiratory syncytial virus – from discovery to vaccines · 2026 · Related
  19. Understanding Clostridium difficile Colonization · Monique J. T. Crobach · 2018 · 325 citations · Cited by this paper
  20. Face mask sampling for the detection of microbes in expelled aerosols and the impact of airway clearance on microbial yield in children with cystic fibrosis: a feasibility trial · 2026 · Related
  21. Decreased Cure and Increased Recurrence Rates for Clostridium difficile Infection Caused by the Epidemic C. difficile BI Strain · Laurica A Petrella · 2012 · 190 citations · Cited by this paper
  22. Prevalence of Clostridium difficile environmental contamination and strain variability in multiple health care facilities · Erik R. Dubberke · 2007 · 152 citations · Cited by this paper
  23. Signature of Microbial Dysbiosis in Periodontitis · Vincent Meuric · 2017 · 151 citations · Cited by this paper
  24. Fusobacterium nucleatum Adheres to Clostridioides difficile via the RadD Adhesin to Enhance Biofilm Formation in Intestinal Mucus · Melinda Anne Engevik · 2020 · 124 citations · Cited by this paper
  25. STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions · Kenneth Katz · 2021 · 115 citations · Cited by this paper
  26. Oral Microbiome in Relation to Periodontitis Severity and Systemic Inflammation · Adelina S. Plachokova · 2021 · 95 citations · Cited by this paper
  27. Tracing the accumulation of in vivo human oral microbiota elucidates microbial community dynamics at the gateway to the GI tract · Jinfeng Wang · 2019 · 79 citations · Cited by this paper
  28. Periodontitis associates with species-specific gene expression of the oral microbiota · Daniel Belstrøm · 2021 · 57 citations · Cited by this paper
  29. Gut Microbiota Composition Associated With Clostridium difficile-Positive Diarrhea and C. difficile Type in ICU Patients · Juping Duan · 2020 · 48 citations · Cited by this paper
  30. Oral Microbiome Profile of the US Population · Anil K. Chaturvedi · 2025 · 40 citations · Cited by this paper
  31. Anna Karenina and the subgingival microbiome associated with periodontitis · Khaled Altabtbaei · 2021 · 37 citations · Cited by this paper
  32. Healthcare resource use and attributable cost of Clostridium difficile infection: a micro-costing analysis comparing first and recurrent episodes · Rebecca Tresman · 2018 · 29 citations · Cited by this paper
  33. The global burden and trend of Clostridioides difficile and its association with world antibiotic consumption, 1990–2019 · Yonghao Chen · 2024 · 26 citations · Cited by this paper
  34. The oral-gut microbiota relationship in healthy humans: identifying shared bacteria between environments and age groups · Carolina F. F. A. Costa · 2024 · 25 citations · Cited by this paper
  35. An Analysis of Clostridium difficile Environmental Contamination During and After Treatment for C difficile Infection · Kerrie Davies · 2020 · 20 citations · Cited by this paper
  36. Substantial Differences in the Subgingival Microbiome Measured by 16S Metagenomics According to Periodontitis Status in Older Women · Michael J. LaMonte · 2018 · 19 citations · Cited by this paper
  37. Physical Pre-Treatment Improves Efficient DNA Extraction and qPCR Sensitivity from Clostridium Difficile Spores in Faecal Swine Specimens · Łukasz Grześkowiak · 2016 · 13 citations · Cited by this paper
  38. Taxonomic and Gene Category Analyses of Subgingival Plaques from a Group of Japanese Individuals with and without Periodontitis · Kazuki Izawa · 2021 · 12 citations · Cited by this paper
  39. Multi-site analysis of biosynthetic gene clusters from the periodontitis oral microbiome · Mohamad Koohi‐Moghadam · 2024 · 6 citations · Cited by this paper

Source: OpenAlex (CC0)