Research map: Comparative genomic characterization and antimicrobial resistance of bacteremia-causing Enterococcus faecium and Enterococcus faecalis in a Chinese hospital

Back to the article

Papers in this map

  1. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing · Yoav Benjamini · 1995 · 112507 citations · Cited by this paper
  2. Twelve years of genomic surveillance of vancomycin-resistant Enterococcus faecium: emergence of linear vanA and bacteriocin-carrying plasmids challenging infection control · Ana C. Almeida-Santos · 2026 · 2 citations · Related
  3. fastp: an ultra-fast all-in-one FASTQ preprocessor · Shifu Chen · 2018 · 31731 citations · Cited by this paper
  4. Comparative evaluation of probe-capture and conventional metagenomic sequencing across multiple clinical sample types, with analysis of paired bronchoalveolar lavage fluid and blood samples · 2026 · Related
  5. Prokka: rapid prokaryotic genome annotation · Torsten Seemann · 2014 · 20457 citations · Cited by this paper
  6. An integrated proteomics and transcriptomics analysis highlights concordance between protein turnover and carbohydrate transport and metabolism as key functional categories during the growth of Trichophyton rubrum · 2026 · Related
  7. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis · Christopher J L Murray · 2022 · 16618 citations · Cited by this paper
  8. A rapid molecular assay for the detection of hypervirulent Klebsiella pneumoniae in the context of antimicrobial resistance surveillance · 2026 · Related
  9. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments · Morgan N. Price · 2010 · 16433 citations · Cited by this paper
  10. Differential virulence potential of different clades of multidrug-resistant Klebsiella pneumoniae ST258 · 2026 · Related
  11. Roary: rapid large-scale prokaryote pan genome analysis · Andrew J. Page · 2015 · 6217 citations · Cited by this paper
  12. Markerless gene deletion in Porphyromonas gingivalis using a pheS* -based counterselection system · 2026 · Related
  13. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries · Chirag Jain · 2018 · 6061 citations · Cited by this paper
  14. Resistance to last-resort antibiotics in enterococci · 2025 · Related
  15. eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale · Carlos P. Cantalapiedra · 2021 · 5096 citations · Cited by this paper
  16. Occurrence of vanA/vanM-positive vancomycin-resistant Enterococcus faecium in hospital wastewater associated with clinical infections in Guangzhou, China: A genomic epidemiological study · 2025 · Related
  17. Using SPAdes De Novo Assembler · Andrey D. Prjibelski · 2020 · 3775 citations · Cited by this paper
  18. Genomic insights into the spread of vancomycin- and tigecycline-resistant Enterococcus faecium ST117 · 2025 · Related
  19. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins · Nicholas J. Croucher · 2014 · 3017 citations · Cited by this paper
  20. AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence · Michael Feldgarden · 2021 · 1745 citations · Cited by this paper
  21. Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification · Oliver Schwengers · 2021 · 1511 citations · Cited by this paper
  22. Metagenome analysis using the Kraken software suite · Jennifer Lu · 2022 · 808 citations · Cited by this paper
  23. Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium · Mark de Been · 2015 · 350 citations · Cited by this paper
  24. A Review of Combination Antimicrobial Therapy for Enterococcus faecalis Bloodstream Infections and Infective Endocarditis · Maya Beganovic · 2018 · 242 citations · Cited by this paper
  25. Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium · Sergio Arredondo-Alonso · 2020 · 157 citations · Cited by this paper
  26. Enterococcus faecium: evolution, adaptation, pathogenesis and emerging therapeutics · Yahan Wei · 2024 · 139 citations · Cited by this paper
  27. Tigecycline resistance in clinical isolates of Enterococcus faecium is mediated by an upregulation of plasmid-encoded tetracycline determinants tet (L) and tet (M) · S. Fiedler · 2015 · 136 citations · Cited by this paper
  28. Thirty years of VRE in Germany – “expect the unexpected”: The view from the National Reference Centre for Staphylococci and Enterococci · Guido Werner · 2020 · 131 citations · Cited by this paper
  29. Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era · Anna Kaarina Pöntinen · 2021 · 126 citations · Cited by this paper
  30. Comparative genomic analysis of the genus Enterococcus · Zhi Zhong · 2017 · 104 citations · Cited by this paper
  31. Investigating the mobilome in clinically important lineages of Enterococcus faecium and Enterococcus faecalis · Theresa Mikalsen · 2015 · 96 citations · Cited by this paper
  32. Genome-based characterization of hospital-adapted Enterococcus faecalis lineages · Kathy E. Raven · 2016 · 92 citations · Cited by this paper
  33. Genome-based studies indicate that the Enterococcus faecium Clade B strains belong to Enterococcus lactis species and lack of the hospital infection associated markers · Mireya Viviana Belloso Daza · 2021 · 91 citations · Cited by this paper
  34. Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings · Charlie K. Higgs · 2022 · 78 citations · Cited by this paper
  35. A merican crows as carriers of vancomycin‐resistant enterococci with vanA gene · Veronika Oravcová · 2013 · 77 citations · Cited by this paper
  36. Split k-mer analysis compared to cgMLST and SNP-based core genome analysis for detecting transmission of vancomycin-resistant enterococci: results from routine outbreak analyses across different hospitals and hospitals networks in Berlin, Germany · Friederike Maechler · 2023 · 69 citations · Cited by this paper
  37. Microevolutionary Events Involving Narrow Host Plasmids Influences Local Fixation of Vancomycin-Resistance in Enterococcus Populations · Ana R. Freitas · 2013 · 68 citations · Cited by this paper
  38. Distribution of putative virulence markers in Enterococcus faecium: towards a safety profile review · Ana R. Freitas · 2017 · 65 citations · Cited by this paper
  39. Surveillance of vancomycin-resistant enterococci reveals shift in dominating clones and national spread of a vancomycin-variable vanA Enterococcus faecium ST1421-CT1134 clone, Denmark, 2015 to March 2019 · Anette Marie Hammerum · 2019 · 63 citations · Cited by this paper

Source: OpenAlex (CC0)