Research map: Whole-transcriptome RNA sequencing and ceRNA network analyses provide novel insights into the antibacterial immune response of Hippocampus abdominalis against Vibrio harveyi

Back to the article

Papers in this map

  1. Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method · Kenneth J. Livak · 2001 · 185110 citations · Cited by this paper
  2. Comparative transcriptome analysis reveals ncRNA-mediated regulatory networks associated with muscle crispiness in grass carp · 2026 · Related
  3. Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks · Paul T. Shannon · 2003 · 55846 citations · Cited by this paper
  4. Low-salinity stress alters growth, histology, physiology, and transcriptomic profiles of the gills and antennal glands in Macrobrachium rosenbergii · 2026 · Related
  5. edgeR : a Bioconductor package for differential expression analysis of digital gene expression data · Mark D. Robinson · 2009 · 45514 citations · Cited by this paper
  6. ScRNA-seq analysis reveals the effects of nitrite stress on the endocrine system of the eyestalk in Litopenaeus vannamei · 2026 · Related
  7. Gene Ontology: tool for the unification of biology · Michael Ashburner · 2000 · 45449 citations · Cited by this paper
  8. Transcriptomic insights into thermal stress reveal physiological trade-off between thermal stress adaptation and reproductive investment in Spodoptera litura · 2026 · Related
  9. MicroRNAs · David P. Bartel · 2004 · 35148 citations · Cited by this paper
  10. Transcriptomic analysis provides molecular insights into the innate immune defense of Mactra veneriformis against Vibrio alginolyticus infection · 2026 · Related
  11. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads · Mihaela Pertea · 2015 · 16111 citations · Cited by this paper
  12. Effects of rumen fluid transplantation on longissimus dorsi muscle development in Xizang sheep: An association analysis based on transcriptomic and serum metabolomic profiles · 2026 · Related
  13. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks · Cole Trapnell · 2012 · 13042 citations · Cited by this paper
  14. Genome-wide identification and expression profiling of HSD3B and SDR42E1 genes in the Pacific oyster (Crassostrea gigas): potential associations with gonadal development · 2026 · Related
  15. A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language? · Leonardo Salmena · 2011 · 7811 citations · Cited by this paper
  16. Proteomic responses of the oil palm pest Metisa plana (Psychidae) to farnesyl acetate exposure · 2026 · Related
  17. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown · Mihaela Pertea · 2016 · 7783 citations · Cited by this paper
  18. Functional role and regulatory network of miR-22-3p in chicken hepatic lipid metabolism · 2026 · Related
  19. KEGG for linking genomes to life and the environment · Minoru I. Kanehisa · 2007 · 7128 citations · Cited by this paper
  20. Male accessory gland proteins in Grapholita molesta: Identification and reproductive functional validation of four accessory gland-specific lipases · 2026 · Related
  21. Prediction of Mammalian MicroRNA Targets · Benjamin P. Lewis · 2003 · 5235 citations · Cited by this paper
  22. NF-κB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses · Konstantin D. Taganov · 2006 · 4351 citations · Cited by this paper
  23. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades · Marc R. Friedländer · 2011 · 3458 citations · Cited by this paper
  24. A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA · Marcella Cesana · 2011 · 2633 citations · Cited by this paper
  25. The microRNA.org resource: targets and expression · Doron Betel · 2007 · 2571 citations · Cited by this paper
  26. Non-coding RNA networks in cancer · Eleni Anastasiadou · 2017 · 2007 citations · Cited by this paper
  27. LncTar: a tool for predicting the RNA targets of long noncoding RNAs · Jianwei Li · 2014 · 502 citations · Cited by this paper
  28. The non-coding RNA interactome in joint health and disease · Shabana Amanda Ali · 2021 · 235 citations · Cited by this paper
  29. The roles of microRNAs in mouse development · Brian DeVeale · 2021 · 134 citations · Cited by this paper
  30. Improving initial survival in cultured seahorses, Hippocampus abdominalis Leeson, 1827 (Teleostei: Syngnathidae) · Chris M. C. Woods · 2000 · 118 citations · Cited by this paper
  31. The lncRNA Malat1 functions as a ceRNA to contribute to berberine-mediated inhibition of HMGB1 by sponging miR-181c-5p in poststroke inflammation · Ding-wen Cao · 2019 · 102 citations · Cited by this paper
  32. Outbreak of vibriosis caused by Vibrio harveyi and Vibrio alginolyticus in farmed seahorse Hippocampus kuda in China · Jiasong Xie · 2020 · 68 citations · Cited by this paper
  33. Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution · Chunyan Li · 2021 · 65 citations · Cited by this paper
  34. LncRNA–miRNA–mRNA regulatory axes in endometrial cancer: a comprehensive overview · Abhishek Shetty · 2022 · 62 citations · Cited by this paper
  35. In vitro antibiofilm efficacy of Piper betle against quorum sensing mediated biofilm formation of luminescent Vibrio harveyi · Srinivasan Ramanathan · 2017 · 59 citations · Cited by this paper
  36. Long Noncoding RNA IFITM4P Regulates Host Antiviral Responses by Acting as a Competing Endogenous RNA · Meng Xiao · 2021 · 51 citations · Cited by this paper
  37. Comparative analysis of long non-coding RNAs in Atlantic and Coho salmon reveals divergent transcriptome responses associated with immunity and tissue repair during sea lice infestation · Valentina Valenzuela‐Muñoz · 2018 · 34 citations · Cited by this paper
  38. The novel fish miRNA pol-miR-novel_171 and its target gene FAM49B play a critical role in apoptosis and bacterial infection · Wenrui Li · 2020 · 29 citations · Cited by this paper
  39. Molecular characterization, expression, and functional analysis of cystatin B in the big-belly seahorse (Hippocampus abdominalis) · Yasara Kavindi Kodagoda · 2022 · 16 citations · Cited by this paper

Source: OpenAlex (CC0)