Research map: Evaluating the potential for respiratory metagenomics to improve treatment of secondary infection and detection of nosocomial transmission on expanded COVID-19 intensive care units

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  1. Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study · Fei Zhou · 2020 · 29228 citations · Cited by this paper
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  13. Clinical metagenomics · Charles Y. Chiu · 2019 · 1696 citations · Cited by this paper
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  17. Drug resistance and vaccine target surveillance of Plasmodium falciparum using nanopore sequencing in Ghana · Sophia T. Girgis · 2023 · 48 citations · Cites this paper
  18. Long-read transcriptome sequencing and Drosophila-based functional validation reveal novel gene fusions in fusion panel-negative gliomas · 2026 · Related
  19. SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments · Andrew J. Page · 2016 · 1347 citations · Cited by this paper
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  21. Comprehensive genomic characterization of extraintestinal pathogenic Escherichia coli isolated from neonates: multiple center insights into virulence, resistance, and transmission dynamics · 2026 · Related
  22. Invasive aspergillosis in patients admitted to the intensive care unit with severe influenza: a retrospective cohort study · Alexander F. A. D. Schauwvlieghe · 2018 · 925 citations · Cited by this paper
  23. A dual-process of targeted and unbiased Nanopore sequencing enables accurate and rapid diagnosis of lower respiratory infections · Yifan Guo · 2023 · 36 citations · Cites this paper
  24. Infiltrating monocyte-derived macrophages does not survive long term in stroke brain despite their dominance in the acute ischemic core and myeloid derived IGF-1 play dichotomous roles in stroke recovery · 2026 · Related
  25. Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection · Themoula Charalampous · 2019 · 755 citations · Cited by this paper
  26. Unified metagenomic method for rapid detection of microorganisms in clinical samples · Adela Alcolea-Medina · 2024 · 35 citations · Cites this paper
  27. Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids · Wei Jie Gu · 2020 · 716 citations · Cited by this paper
  28. Optimizing Nanopore Sequencing for Rapid Detection of Microbial Species and Antimicrobial Resistance in Patients at Risk of Surgical Site Infections · Emma Whittle · 2022 · 34 citations · Cites this paper
  29. A Clinical Algorithm to Diagnose Invasive Pulmonary Aspergillosis in Critically Ill Patients · Stijn I. Blot · 2012 · 650 citations · Cited by this paper
  30. The upper and lower respiratory tract microbiome in severe aspiration pneumonia · Georgios D. Kitsios · 2023 · 29 citations · Cites this paper
  31. Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid · Steve A. Miller · 2019 · 602 citations · Cited by this paper
  32. Rapid pan-microbial metagenomics for pathogen detection and personalised therapy in the intensive care unit: a single-centre prospective observational study · Adela Alcolea-Medina · 2025 · 28 citations · Cites this paper
  33. Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak · Liana Eleni Kafetzopoulou · 2019 · 298 citations · Cited by this paper
  34. Detection of Pathogens and Antimicrobial Resistance Genes in Ventilator-Associated Pneumonia by Metagenomic Next-Generation Sequencing Approach · Ting Chen · 2023 · 27 citations · Cites this paper
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  36. Metagenomic Sequencing in the ICU for Precision Diagnosis of Critical Infectious Illnesses · Lucile P. A. Neyton · 2023 · 27 citations · Cites this paper
  37. Untitled · Cited by this paper
  38. Applicability of Bronchoalveolar Lavage Fluid and Plasma Metagenomic Next-Generation Sequencing Assays in the Diagnosis of Pneumonia · Dongsheng Han · 2023 · 26 citations · Cites this paper
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