Research map: PlasmidRiskNet: An explainable machine-learning framework for antimicrobial resistance plasmid risk stratification

Back to the article

Papers in this map

  1. Random Forests · Leo Breiman · 2001 · 133269 citations · Cited by this paper
  2. The epidemiology of Mycoplasma pneumoniae infections in 2023 and hypothesis of "Immunity Debt": A single-center correlation analysis of the post-COVID-19 · 2026 · Related
  3. SciPy 1.0: fundamental algorithms for scientific computing in Python · Pauli Virtanen · 2020 · 40235 citations · Cited by this paper
  4. R0 of Bundibugyo virus disease and the critical issue of case ascertainment in the Democratic Republic of the Congo · 2026 · Related
  5. Greedy function approximation: A gradient boosting machine. · Jerome H. Friedman · 2001 · 30680 citations · Cited by this paper
  6. Is activated partial thromboplastin time prolongation an independent predictor of bleeding in patients with Kyasanur Forest Disease? A retrospective cohort study from southern India · 2026 · Related
  7. Array programming with NumPy · Charles R. Harris · 2020 · 23983 citations · Cited by this paper
  8. High prevalence of anal HPV16 infection among HIV-negative men who have sex with men and transgender women using pre-exposure prophylaxis: a single-centre retrospective cross-sectional study · 2026 · Related
  9. An Introduction to the Bootstrap · Bradley Efron · 1993 · 21221 citations · Cited by this paper
  10. Reproduction numbers of Andes virus vary according to social setting · 2026 · Related
  11. Data Structures for Statistical Computing in Python · Wes McKinney · 2010 · 11808 citations · Cited by this paper
  12. Epidemiology of Achromobacter in a French hospital over six years: sample types, species, and antibiotic resistance profiles · 2026 · Related
  13. Exploring Network Structure, Dynamics, and Function using NetworkX · Aric A. Hagberg · 2008 · 7721 citations · Cited by this paper
  14. Incidence of carbapenemase-resistant isolates of Klebsiella pneumoniae in a regional hospital in Slovakia; contribution of virulence genes and biofilm production to overall pathogenicity · 2026 · Related
  15. In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing · Alessandra Carattoli · 2014 · 5103 citations · Cited by this paper
  16. A faster algorithm for betweenness centrality* · Ulrik Brandes · 2001 · 5031 citations · Cited by this paper
  17. The ecology of the microbiome: Networks, competition, and stability · Katharine Z. Coyte · 2015 · 2964 citations · Cited by this paper
  18. Mobile Genetic Elements Associated with Antimicrobial Resistance · Sally R. Partridge · 2018 · 2805 citations · Cited by this paper
  19. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database · Brian P. Alcock · 2022 · 2461 citations · Cited by this paper
  20. AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence · Michael Feldgarden · 2021 · 1745 citations · Cited by this paper
  21. Mobility of Plasmids · Christopher S. Smillie · 2010 · 1233 citations · Cited by this paper
  22. Heavy metal driven co-selection of antibiotic resistance in soil and water bodies impacted by agriculture and aquaculture · Claudia Seiler · 2012 · 1136 citations · Cited by this paper
  23. Plasmids and the spread of resistance · Alessandra Carattoli · 2013 · 1055 citations · Cited by this paper
  24. The global epidemiology of carbapenemase-producing Enterobacteriaceae · David van Duin · 2016 · 1020 citations · Cited by this paper
  25. Ecology drives a global network of gene exchange connecting the human microbiome · Christopher S. Smillie · 2011 · 1016 citations · Cited by this paper
  26. Scale-free networks are rare · Anna D. Broido · 2019 · 891 citations · Cited by this paper
  27. Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential · Chandan Pal · 2015 · 853 citations · Cited by this paper
  28. The WHO Bacterial Priority Pathogens List 2024: a prioritisation study to guide research, development, and public health strategies against antimicrobial resistance · Hatim F. Sati · 2025 · 846 citations · Cited by this paper
  29. Conjugative plasmids: vessels of the communal gene pool · Anders Norman · 2009 · 555 citations · Cited by this paper
  30. PLSDB: a resource of complete bacterial plasmids · Valentina Galata · 2018 · 524 citations · Cited by this paper
  31. Lateral genetic transfer and the construction of genetic exchange communities · Elizabeth Skippington · 2011 · 154 citations · Cited by this paper
  32. Integrative Genomic and in Silico Analysis Reveals Mitochondrially Encoded Cytochrome C Oxidase III (MT—CO3) Overexpression and Potential Neem-Derived Inhibitors in Breast Cancer · Oluwaseun Emmanuel Agboola · 2025 · 16 citations · Cited by this paper
  33. A Broad-Host-Range Plasmid Outbreak: Dynamics of IncL/M Plasmids Transferring Carbapenemase Genes · María Getino · 2022 · 14 citations · Cited by this paper
  34. Computational analysis of Curcuma longa L compounds: Unraveling molecular interactions and drug-like properties for novel therapeutic applications · Oluwaseun Emmanuel Agboola · 2025 · 13 citations · Cited by this paper
  35. Computational genome engineering through AI-CRISPR-precision medicine integration in modern therapeutics · Oluwaseun Emmanuel Agboola · 2025 · 11 citations · Cited by this paper
  36. Integrated Virtual Screening for Anti-Caries Compounds from Neem: Dual-Target Inhibition of Biofilm Formation and Bacterial DNA Replication · Oluwaseun Emmanuel Agboola · 2025 · 11 citations · Cited by this paper
  37. Machine learning framework for multi-regulatory safety assessment of traditional Chinese medicine compounds · Oluwaseun Emmanuel Agboola · 2026 · 9 citations · Cited by this paper
  38. Computational identification of marine microalgal metabolites as human voltage-dependent anion channel 1 modulators: Virtual screening, DFT analysis, molecular dynamics simulation, and machine learning-supported cheminformatic validation · Oluwaseun Emmanuel Agboola · 2026 · 7 citations · Cited by this paper
  39. The rise and global spread of IMP carbapenemases (1996-2023): a genomic epidemiology study · Ben Vezina · 2025 · 6 citations · Cited by this paper

Source: OpenAlex (CC0)