Research map: A pseudo-phased genome assembly for Hemileia vastatrix reveals an isolate-specific chromosomal haploid trisomy
Back to the article
Papers in this map
The Sequence Alignment/Map format and SAMtools
· Heng Li · 2009 · 69162 citations · Cited by this paper
Multi-locus models of deleterious epimutation-selection balance and the evolution of recombination modifiers
· 2026 · Related
Minimap2: pairwise alignment for nucleotide sequences
· Heng Li · 2018 · 17727 citations · Cited by this paper
Genomes of the ex-type strains of Elsinoë mangiferae and E. perseae , the causal agents of scab on mango and avocado
· 2026 · Related
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
· Felipe A. Simão · 2015 · 14932 citations · Cited by this paper
Genetic mapping and nuclear interactions of an incompatibility response in Agaricus bisporus
· 2026 · Related
QUAST: quality assessment tool for genome assemblies
· Alexey A. Gurevich · 2013 · 12014 citations · Cited by this paper
The curious case of sporadic nematode susceptibility in “Tifguard” peanut ( Arachis hypogaea ): seed mixture or genetic instability?
· 2026 · Related
InterProScan 5: genome-scale protein function classification
· PHILIP M. JONES · 2014 · 10375 citations · Cited by this paper
No evidence of sex-ratio meiotic drive associated with the X -linked In(1)Be inversion in Drosophila melanogaster
· 2026 · Related
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
· Erez Lieberman-Aiden · 2009 · 9886 citations · Cited by this paper
Genes near tRNAs are enriched in translational machinery
· 2026 · Related
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
· Sergey Koren · 2017 · 8360 citations · Cited by this paper
Annotated genome assemblies of two temperate North American dung beetles, Canthon chalcites and Phanaeus vindex
· 2026 · Related
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
· Mosè Manni · 2021 · 6489 citations · Cited by this paper
The complete sequence of the silkworm W chromosome uncovers its rapid evolution by large-scale duplications/deletions and translocation of W-linked genes
· 2026 · Related
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
· Heng Li · 2013 · 5531 citations · Cited by this paper
Revisiting additive and dominance effects
· 2026 · Related
Sensitive protein alignments at tree-of-life scale using DIAMOND
· Benjamin Buchfink · 2021 · 5461 citations · Cited by this paper
Diploids derived from polyploids: genetic characteristics of four novel interspecific Sorghum populations
· 2026 · Related
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
· Neva C. Durand · 2016 · 4412 citations · Cited by this paper
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
· Arang Rhie · 2020 · 3821 citations · Cited by this paper
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
· Olga Dudchenko · 2017 · 3166 citations · Cited by this paper
Estimation of nuclear DNA content in plants using flow cytometry
· Jaroslav Doležel · 2007 · 1688 citations · Cited by this paper
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
· Michael J. Roach · 2018 · 1325 citations · Cited by this paper
Plant DNA Flow Cytometry and Estimation of Nuclear Genome Size
· Jaroslav Doležel · 2004 · 1072 citations · Cited by this paper
Predicting Secretory Proteins with SignalP
· Henrik Nielsen · 2017 · 1005 citations · Cited by this paper
A method for the absolute quantification of cDNA using real-time PCR
· Joseph A. Whelan · 2003 · 792 citations · Cited by this paper
How good is a PCR efficiency estimate: Recommendations for precise and robust qPCR efficiency assessments
· Dávid Švec · 2015 · 622 citations · Cited by this paper
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
· Jiahe Sun · 2023 · 544 citations · Cited by this paper
EffectorP 3.0: Prediction of Apoplastic and Cytoplasmic Effectors in Fungi and Oomycetes
· Jana Sperschneider · 2021 · 533 citations · Cited by this paper
OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes
· Fredrik Tegenfeldt · 2024 · 349 citations · Cited by this paper
MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics
· Eli Levy Karin · 2020 · 336 citations · Cited by this paper
The coffee leaf rust pathogen Hemileia vastatrix : one and a half centuries around the tropics
· Pedro Talhinhas · 2016 · 269 citations · Cited by this paper
ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes
· Lakshay Anand · 2022 · 217 citations · Cited by this paper
Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus
· Peng Zhao · 2019 · 158 citations · Cited by this paper
HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
· Ritu Kundu · 2019 · 154 citations · Cited by this paper
The Big Rust and the Red Queen: Long-Term Perspectives on Coffee Rust Research
· Stuart George McCook · 2015 · 150 citations · Cited by this paper
Tiara: deep learning-based classification system for eukaryotic sequences
· Michał Karlicki · 2021 · 147 citations · Cited by this paper
Source: OpenAlex (CC0)