Research map: Integrative Analyses of Individual Patient Genomic-Data to Discover Novel Biomarkers: Application to Cervical Pre-Cancer DNA-Methylation Datasets

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  1. limma powers differential expression analyses for RNA-sequencing and microarray studies · Matthew E. Ritchie · 2015 · 44581 citations · Cited by this paper
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  9. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays · Martin J. Aryee · 2014 · 4962 citations · Cited by this paper
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  11. Minimum information about a microarray experiment (MIAME)—toward standards for microarray data · Alvis Brāzma · 2001 · 4132 citations · Cited by this paper
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  13. MOGONET integrates multi-omics data using graph convolutional networks allowing patient classification and biomarker identification · Tongxin Wang · 2021 · 674 citations · Cited by this paper
  14. Development of Prediction Model for 5-year Survival of Colorectal Cancer · 2024 · Related
  15. Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array · E. Magda Price · 2013 · 541 citations · Cited by this paper
  16. Unveiling Recurrence Patterns: Analyzing Predictive Risk Factors for Breast Cancer Recurrence after Surgery · 2024 · Related
  17. Open Targets Platform: new developments and updates two years on · Denise Carvalho‐Silva · 2018 · 537 citations · Cited by this paper
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  19. CSF1R inhibition delays cervical and mammary tumor growth in murine models by attenuating the turnover of tumor-associated macrophages and enhancing infiltration by CD8+T cells · Debbie C. Strachan · 2013 · 386 citations · Cited by this paper
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  22. ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments · Helen E. Parkinson · 2010 · 340 citations · Cited by this paper
  23. Data Analysis Using R Programming · Bertram K. C. Chan · 2018 · 266 citations · Cited by this paper
  24. DNA methylation-based predictors of health: applications and statistical considerations · Paul Darius Yousefi · 2022 · 260 citations · Cited by this paper
  25. Integrative analysis of DNA methylation and gene expression identified cervical cancer-specific diagnostic biomarkers · Wanxue Xu · 2019 · 176 citations · Cited by this paper
  26. Performance of high-risk human papillomavirus DNA testing as a primary screen for cervical cancer: a pooled analysis of individual patient data from 17 population-based studies from China · Fanghui Zhao · 2010 · 162 citations · Cited by this paper
  27. The use of host cell DNA methylation analysis in the detection and management of women with advanced cervical intraepithelial neoplasia: a review · Wieke W. Kremer · 2020 · 120 citations · Cited by this paper
  28. Cervical HPV infection in Guangzhou, China: an epidemiological study of 198,111 women from 2015 to 2021 · Xiaohan Yang · 2023 · 112 citations · Cited by this paper
  29. Cervical cancer screening using DNA methylation triage in a real-world population · Lena Schreiberhuber · 2024 · 97 citations · Cited by this paper
  30. DNMT1 recruited by EZH2-mediated silencing of miR-484 contributes to the malignancy of cervical cancer cells through MMP14 and HNF1A · Yang Hu · 2019 · 96 citations · Cited by this paper
  31. The role of HPV‑induced epigenetic changes in cervical carcinogenesis (Review) · Martha Da Silva · 2021 · 82 citations · Cited by this paper
  32. The Drivers, Mechanisms, and Consequences of Genome Instability in HPV-Driven Cancers · Vanessa Porter · 2022 · 82 citations · Cited by this paper
  33. DNA Methylation and Hydroxymethylation in Cervical Cancer: Diagnosis, Prognosis and Treatment · Hongming Zhu · 2020 · 78 citations · Cited by this paper
  34. Alterations of Golgi Structural Proteins and Glycosylation Defects in Cancer · Xiaoyan Zhang · 2021 · 71 citations · Cited by this paper
  35. Characterisation and reproducibility of the HumanMethylationEPIC v2.0 BeadChip for DNA methylation profiling · Timothy J. Peters · 2024 · 69 citations · Cited by this paper
  36. Effects of DNMT1 silencing on malignant phenotype and methylated gene expression in cervical cancer cells · Yi Zhang · 2011 · 64 citations · Cited by this paper
  37. Elevated Expression of the Oncogene c-fms and Its Ligand, the Macrophage Colony-Stimulating Factor-1, in Cervical Cancer and the Role of Transforming Growth Factor-β1 in Inducing c-fms Expression · Nameer B. Kirma · 2007 · 57 citations · Cited by this paper
  38. Increased expression of DNA methyltransferase 1 (DNMT1) protein in uterine cervix squamous cell carcinoma and its precursor lesion · Morio Sawada · 2006 · 55 citations · Cited by this paper
  39. Detection of Host Cell Gene/HPV DNA Methylation Markers: A Promising Triage Approach for Cervical Cancer · Lingyi Zhang · 2022 · 50 citations · Cited by this paper

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