Research map: Leave No Data Behind: Exploring a new paradigm in oncology with foundation models and large language models

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Papers in this map

  1. Highly accurate protein structure prediction with AlphaFold · John Jumper · 2021 · 47614 citations · Cited by this paper
  2. Mapping the Research Landscape and Emerging Themes of Large Language Models in Cancer Diagnosis: A Bibliometric Analysis (Preprint) · Qiaomu Tian · 2026 · Cites this paper
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  5. Persistent cytolytic CD8+ T cells recognize SARS-CoV-2 and herpesvirus epitopes in long COVID · 2026 · Related
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  8. Segment anything in medical images · Jun Ma · 2024 · 2881 citations · Cited by this paper
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  10. Clinical-grade computational pathology using weakly supervised deep learning on whole slide images · Gabriele S. V. Campanella · 2019 · 2867 citations · Cited by this paper
  11. Case of complete response to immunotherapy in MMR-deficient prostate cancer associated with NK-like and CD4+CD8+ T cells · 2026 · Related
  12. Data-efficient and weakly supervised computational pathology on whole-slide images · Ming Y. Lu · 2021 · 2284 citations · Cited by this paper
  13. Therapeutic Gfral silencing via antisense oligonucleotides ameliorates cancer-associated cachexia and extends survival in tumor-bearing mice · 2026 · Related
  14. Accurate proteome-wide missense variant effect prediction with AlphaMissense · Jun Cheng · 2023 · 2246 citations · Cited by this paper
  15. Köhlmeier-Degos disease is an interferonopathy characterized by type I and II interferon-driven inflammatory vasculopathy · 2026 · Related
  16. Foundation models for generalist medical artificial intelligence · Michael Moor · 2023 · 1947 citations · Cited by this paper
  17. Metabolomic and lifestyle profiles refine BMI-metabolic phenotypes in older adults · 2026 · Related
  18. PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data · Oscar Franzén · 2019 · 1733 citations · Cited by this paper
  19. Alterations of the host-lung microbiome metasystem in systemic inflammatory response syndrome is associated with secondary pneumonia · 2026 · Related
  20. Artificial intelligence in digital pathology — new tools for diagnosis and precision oncology · Kaustav Bera · 2019 · 1732 citations · Cited by this paper
  21. Agentic AI in Radiology: Evolution from Large Language Models to Future Clinical Integration · 2026 · Related
  22. Towards a general-purpose foundation model for computational pathology · Richard J. Chen · 2024 · 1473 citations · Cited by this paper
  23. Effective gene expression prediction from sequence by integrating long-range interactions · Žiga Avsec · 2021 · 1422 citations · Cited by this paper
  24. DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome · Yanrong Ji · 2021 · 1355 citations · Cited by this paper
  25. Multimodal biomedical AI · Julián Acosta · 2022 · 1325 citations · Cited by this paper
  26. scGPT: toward building a foundation model for single-cell multi-omics using generative AI · Haotian Cui · 2024 · 1262 citations · Cited by this paper
  27. Transfer learning enables predictions in network biology · Christina V. Theodoris · 2023 · 1207 citations · Cited by this paper
  28. ProteinBERT: a universal deep-learning model of protein sequence and function · Nadav Brandes · 2022 · 1068 citations · Cited by this paper
  29. The imperative for regulatory oversight of large language models (or generative AI) in healthcare · Bertalan Meskó · 2023 · 1051 citations · Cited by this paper
  30. A visual-language foundation model for computational pathology · Ming Y. Lu · 2024 · 921 citations · Cited by this paper
  31. A whole-slide foundation model for digital pathology from real-world data · Hanwen Xu · 2024 · 870 citations · Cited by this paper
  32. Artificial intelligence for multimodal data integration in oncology · Jana Lipková · 2022 · 772 citations · Cited by this paper
  33. Simulating 500 million years of evolution with a language model · Thomas Hayes · 2025 · 759 citations · Cited by this paper
  34. Transformer-based unsupervised contrastive learning for histopathological image classification · Xiyue Wang · 2022 · 747 citations · Cited by this paper
  35. Algorithmic fairness in artificial intelligence for medicine and healthcare · Richard J. Chen · 2023 · 718 citations · Cited by this paper
  36. Pan-cancer image-based detection of clinically actionable genetic alterations · Jakob Nikolas Kather · 2020 · 694 citations · Cited by this paper
  37. A visual–language foundation model for pathology image analysis using medical Twitter · Zhi Huang · 2023 · 689 citations · Cited by this paper
  38. scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data · Fan Yang · 2022 · 642 citations · Cited by this paper
  39. FUTURE-AI: international consensus guideline for trustworthy and deployable artificial intelligence in healthcare · Karim Lekadir · 2025 · 609 citations · Cited by this paper

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